Genome sequence of the Lebeckia ambigua-nodulating “Burkholderia sprentiae” strain WSM5005ᵀ

Authors

Wayne Reeve, Murdoch University
Sofie E. De Meyer, Murdoch University
Jason Terpolilli, Murdoch University
Vanessa Melino, Murdoch University
Julie Kaye Ardley, Murdoch UniversityFollow
Tian Rui, Murdoch University
Ravi P. Tiwari, Murdoch University
John Gregory Howieson, Murdoch UniversityFollow
Ronald J. Yates, Department of Primary Industries and Regional Development, Western AustraliaFollow
Graham William O'Hara, Murdoch UniversityFollow
Megan Lu, DOE Joint Genome Institute, USA
David Bruce, DOE Joint Genome Institute, USA
Chris Detter, DOE Joint Genome Institute, USA
Roxanne Tapia, DOE Joint Genome Institute, USA
Cliff Han, DOE Joint Genome Institute, USA
Chia-Lin Wei, DOE Joint Genome Institute, USA
Marcel Huntemann, DOE Joint Genome Institute, USA
James Han, DOE Joint Genome Institute, USA
I-Min Chen, Lawrence Berkeley National Laboratory, USA
Konstantinos Mavromatis, DOE Joint Genome Institute, USA
Victor Markowitz, Lawrence Berkeley National Laboratory, USA
Ernest Szeto, Lawrence Berkeley National Laboratory, USA
Natalia Ivanova, DOE Joint Genome Institute, USA
Natalia Mikhailova, DOE Joint Genome Institute, USA
Galina Ovchinikova, DOE Joint Genome Institute, USA
Ioanna Pagani, DOE Joint Genome Institute, USA
Amrita Pati, DOE Joint Genome Institute, USA
Lynne Goodwin, Los Alamos National Laboratory, USA
Lin Peters, DOE Joint Genome Institute, USA
Sam Pitluck, DOE Joint Genome Institute, USA
Tanja Woyke, DOE Joint Genome Institute, USA
Nikos Kyrpides, DOE Joint Genome Institute, USA

Document Type

Article

Publication Date

12-20-2013

Journal Title

Standards in Genomic Sciences

ISSN

1944-3277

Keywords

root-nodule bacteria, nitrogen fixation, rhizobia, Alphaproteobacteria

Disciplines

Agronomy and Crop Sciences | Plant Breeding and Genetics

Abstract

“Burkholderia sprentiae” strain WSM5005T is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated in Australia from an effective N2-fixing root nodule of Lebeckia ambigua collected in Klawer, Western Cape of South Africa, in October 2007. Here we describe the features of “Burkholderia sprentiae” strain WSM5005T, together with the genome sequence and its annotation. The 7,761,063 bp high-quality-draft genome is arranged in 8 scaffolds of 236 contigs, contains 7,147 protein-coding genes and 76 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Recommended Citation

Reeve, W., De Meyer, S., Terpolilli, J. et al. Genome sequence of the Lebeckia ambigua-nodulating “Burkholderia sprentiae” strain WSM5005T. Stand in Genomic Sci 9, 385–394 (2013). https://doi.org/10.4056/sigs.4558268